Sunday, 18 June 2023

We've pumped so much groundwater that we've nudged Earth's spin

 By pumping water out of the ground and moving it elsewhere, humans have shifted such a large mass of water that the Earth tilted nearly 80 centimeters (31.5 inches) east between 1993 and 2010 alone, according to a new study published in Geophysical Research Letters, AGU's journal for short-format, high-impact research with implications spanning the Earth and space sciences.

Based on climate models, scientists previously estimated humans pumped 2,150 gigatons of groundwater, equivalent to more than 6 millimeters (0.24 inches) of sea level rise, from 1993 to 2010. But validating that estimate is difficult.

One approach lies with the Earth's rotational pole, which is the point around which the planet rotates. It moves during a process called polar motion, which is when the position of the Earth's rotational pole varies relative to the crust. The distribution of water on the planet affects how mass is distributed. Like adding a tiny bit of weight to a spinning top, the Earth spins a little differently as water is moved around.

"Earth's rotational pole actually changes a lot," said Ki-Weon Seo, a geophysicist at Seoul National University who led the study. "Our study shows that among climate-related causes, the redistribution of groundwater actually has the largest impact on the drift of the rotational pole."

Water's ability to change the Earth's rotation was discovered in 2016, and until now, the specific contribution of groundwater to these rotational changes was unexplored. In the new study, researchers modeled the observed changes in the drift of Earth's rotational pole and the movement of water -- first, with only ice sheets and glaciers considered, and then adding in different scenarios of groundwater redistribution.

The model only matched the observed polar drift once the researchers included 2150 gigatons of groundwater redistribution. Without it, the model was off by 78.5 centimeters (31 inches), or 4.3 centimeters (1.7 inches) of drift per year.

"I'm very glad to find the unexplained cause of the rotation pole drift," Seo said. "On the other hand, as a resident of Earth and a father, I'm concerned and surprised to see that pumping groundwater is another source of sea-level rise."

"This is a nice contribution and an important documentation for sure," said Surendra Adhikari, a research scientist at the Jet Propulsion Laboratory who was not involved in this study. Adhikari published the 2016 paper on water redistribution impacting rotational drift. "They've quantified the role of groundwater pumping on polar motion, and it's pretty significant."

The location of the groundwater matters for how much it could change polar drift; redistributing water from the midlatitudes has a larger impact on the rotational pole. During the study period, the most water was redistributed in western North America and northwestern India, both at midlatitudes.

Countries' attempts to slow groundwater depletion rates, especially in those sensitive regions, could theoretically alter the change in drift, but only if such conservation approaches are sustained for decades, Seo said.

The rotational pole normally changes by several meters within about a year, so changes due to groundwater pumping don't run the risk of shifting seasons. But on geologic time scales, polar drift can have an impact on climate, Adhikari said.

The next step for this research could be looking to the past.

"Observing changes in Earth's rotational pole is useful for understanding continent-scale water storage variations," Seo said. "Polar motion data are available from as early as the late 19th century. So, we can potentially use those data to understand continental water storage variations during the last 100 years. Were there any hydrological regime changes resulting from the warming climate? Polar motion could hold the answer."

Genome editing used to create disease resistant rice

 Researchers from the University of California, Davis, and an international team of scientists used the genome-editing tool CRISPR-Cas to create disease resistant rice plants, according to a new study published in the journal Nature June 14.

Small-scale field trials in China showed that the newly created rice variety, developed through genome editing of a newly discovered gene, exhibited both high yields and resistance to the fungus that causes a serious disease called rice blast. Rice is an essential crop that feeds half of the world's population.

Guotian Li, a co-lead author of the study, initially discovered a mutant known as a lesion mimic mutant while working as a postdoctoral scholar in Pamela Ronald's lab at UC Davis. Ronald is co-lead author and Distinguished Professor in the Department of Plant Pathology and the Genome Center.

"It's quite a step forward that his team was able to improve this gene, making it potentially useful for farmers. That makes it important," Ronald said.

The roots of the discovery began in Ronald's lab, where they created and sequenced 3,200 distinct rice strains, each possessing diverse mutations. Among these strains, Guotian identified one with dark patches on its leaves.

"He found that the strain was also resistant to bacterial infection, but it was extremely small and low yielding," Ronald said. "These types of 'lesion mimic' mutants have been found before but only in a few cases have they been useful to farmers because of the low yield."

Working with CRISPR

Guotian continued the research when he joined Huazhong Agricultural University in Wuhan, China.

He used CRISPR-Cas9 to isolate the gene related to the mutation and used genome editing to recreate that resistance trait, eventually identifying a line that had good yield and was resistant to three different pathogens, including the fungus that causes rice blast.

In small-scale field trials planted in disease-heavy plots, the new rice plants produced five times more yield than the control rice, which was damaged by the fungus, Ronald said.

"Blast is the most serious disease of plants in the world because it affects virtually all growing regions of rice and also because rice is a huge crop," Ronald said.

Future applications

The researchers hope to recreate this mutation in commonly grown rice varieties. Currently they have only optimized this gene in a model variety called "Kitaake" that is not grown widely. They also hope to target the same gene in wheat to create disease-resistant wheat.

"A lot of these lesion mimic mutants have been discovered and sort of put aside because they have low yield. We're hoping that people can go look at some of these and see if they can edit them to get a nice balance between resistance and high yield," Ronald said.

Rashmi Jain with the UC Davis Department of Plant Pathology and Genome Center also contributed to the research, as did scientists from BGI-Shenzhen, Huazhong Agricultural University, Jiangxi Academy of Agricultural Sciences, Northwest A&F University and Shandong Academy of Agricultural Sciences, China; the Lawrence Berkeley National Laboratory and UC Berkeley; the University of Adelaide, Australia; and the University of Bordeaux, France.

Research in the Ronald lab was supported by the National Science Foundation, the National Institutes of Health and the Joint Bioenergy Institute funded by the US Department of Energy.

Thursday, 15 June 2023

Four-legged robot traverses tricky terrains thanks to improved 3D vision

 Researchers led by the University of California San Diego have developed a new model that trains four-legged robots to see more clearly in 3D. The advance enabled a robot to autonomously cross challenging terrain with ease -- including stairs, rocky ground and gap-filled paths -- while clearing obstacles in its way.

The researchers will present their work at the 2023 Conference on Computer Vision and Pattern Recognition (CVPR), which will take place from June 18 to 22 in Vancouver, Canada.

"By providing the robot with a better understanding of its surroundings in 3D, it can be deployed in more complex environments in the real world," said study senior author Xiaolong Wang, a professor of electrical and computer engineering at the UC San Diego Jacobs School of Engineering.

The robot is equipped with a forward-facing depth camera on its head. The camera is tilted downwards at an angle that gives it a good view of both the scene in front of it and the terrain beneath it.

To improve the robot's 3D perception, the researchers developed a model that first takes 2D images from the camera and translates them into 3D space. It does this by looking at a short video sequence that consists of the current frame and a few previous frames, then extracting pieces of 3D information from each 2D frame. That includes information about the robot's leg movements such as joint angle, joint velocity and distance from the ground. The model compares the information from the previous frames with information from the current frame to estimate the 3D transformation between the past and the present.

The model fuses all that information together so that it can use the current frame to synthesize the previous frames. As the robot moves, the model checks the synthesized frames against the frames that the camera has already captured. If they are a good match, then the model knows that it has learned the correct representation of the 3D scene. Otherwise, it makes corrections until it gets it right.

The 3D representation is used to control the robot's movement. By synthesizing visual information from the past, the robot is able to remember what it has seen, as well as the actions its legs have taken before, and use that memory to inform its next moves.

"Our approach allows the robot to build a short-term memory of its 3D surroundings so that it can act better," said Wang.

The new study builds on the team's previous work, where researchers developed algorithms that combine computer vision with proprioception -- which involves the sense of movement, direction, speed, location and touch -- to enable a four-legged robot to walk and run on uneven ground while avoiding obstacles. The advance here is that by improving the robot's 3D perception (and combining it with proprioception), the researchers show that the robot can traverse more challenging terrain than before.

"What's exciting is that we have developed a single model that can handle different kinds of challenging environments," said Wang. "That's because we have created a better understanding of the 3D surroundings that makes the robot more versatile across different scenarios."

The approach has its limitations, however. Wang notes that their current model does not guide the robot to a specific goal or destination. When deployed, the robot simply takes a straight path and if it sees an obstacle, it avoids it by walking away via another straight path. "The robot does not control exactly where it goes," he said. "In future work, we would like to include more planning techniques and complete the navigation pipeline."

DESI early data release holds nearly two million objects

 The universe is big, and it's getting bigger. To study dark energy, the mysterious force behind the accelerating expansion of our universe, scientists are using the Dark Energy Spectroscopic Instrument (DESI) to map more than 40 million galaxies, quasars, and stars. Today, the collaboration publicly released its first batch of data, with nearly 2 million objects for researchers to explore.

The 80-terabyte data set comes from 2,480 exposures taken over six months during the experiment's "survey validation" phase in 2020 and 2021. In this period between turning the instrument on and beginning the official science run, researchers made sure their plan for using the telescope would meet their science goals -- for example, by checking how long it took to observe galaxies of different brightness, and by validating the selection of stars and galaxies to observe.

"The fact that DESI works so well, and that the amount of science-grade data it took during survey validation is comparable to previous completed sky surveys, is a monumental achievement," said Nathalie Palanque-Delabrouille, co-spokesperson for DESI and a scientist at the Department of Energy's Lawrence Berkeley National Laboratory (Berkeley Lab), which manages the experiment. "This milestone shows that DESI is a unique spectroscopic factory whose data will not only allow the study of dark energy but will also be coveted by the whole scientific community to address other topics, such as dark matter, gravitational lensing, and galactic morphology."

Today the collaboration also published a set of papers related to the early data release, which include early measurements of galaxy clustering, studies of rare objects, and descriptions of the instrument and survey operations. The new papers build on DESI's first measurement of the cosmological distance scale that was published in April, which used the first two months of routine survey data (not included in the early data release) and also showed DESI's ability to accomplish its design goals.

DESI uses 5,000 robotic positioners to move optical fibers that capture light from objects millions or billions of light-years away. It is the most powerful multi-object survey spectrograph in the world, able to measure light from more than 100,000 galaxies in one night. That light tells researchers how far away an object is, building a 3D cosmic map.

"Survey validation was very important for DESI because it allowed us -- before starting the main survey -- to adjust our selection of all the objects, including stars, bright galaxies, luminous red galaxies, emission line galaxies, and quasars," said Christophe Yeche, a scientist with the French Alternative Energies and Atomic Energy Commission (CEA) who co-leads the target selection group. "We've been able to optimize our selection and confirm our observation strategy."

As the universe expands, it stretches light's wavelength, making it redder -- a characteristic known as redshift. The further away the galaxy, the bigger the redshift. DESI specializes in collecting redshifts that can then be used to solve some of astrophysics' biggest puzzles: what dark energy is and how it has changed throughout the universe's history.

While DESI's primary goal is understanding dark energy, much of the data can also be used in other astronomical studies. For example, the early data release contains detailed images from some well-known areas of the sky, such as the Hubble Deep Field.

"There are some well-trodden spots where we've drilled down into the sky," said Stephen Bailey, a scientist at Berkeley Lab who leads data management for DESI. "We've taken valuable spectroscopic images in areas that are of interest to the rest of the community, and we're hoping that other people will take this data and do additional science with it."

Two interesting finds have already surfaced: Evidence of a mass migration of stars into the Andromeda galaxy, and incredibly distant quasars, the extremely bright and active supermassive black holes sometimes found at the center of galaxies.

"We observed some areas at very high depth. People have looked at that data and discovered very high redshift quasars, which are still so rare that basically any discovery of them is useful," said Anthony Kremin, a postdoctoral researcher at Berkeley Lab who led the data processing for the early data release. "Those high-redshift quasars are usually found with very large telescopes, so the fact that DESI -- a smaller, 4-meter survey instrument -- could compete with those larger, dedicated observatories was an achievement we are pretty proud of and demonstrates the exceptional throughput of the instrument."

Survey validation was also a chance to test the process of transforming raw data from DESI's ten spectrometers (which split a galaxy's light into different colors) into useful information.

"If you looked at them, the images coming directly from the camera would look like nonsense -- like lines on a weird, fuzzy image," said Laurie Stephey, a data architect at the National Energy Research Scientific Computing Center (NERSC), the supercomputer that processes DESI's data. "The magic happens in the processing and the software being able to decode the data. It's exciting that we have the technology to make that data accessible to the research community and that we can support this big question of 'what is dark energy?'"

DESI's early data was a unique project for NERSC. All of the experiment's code, including the computational heavy lifting, is written in the programming language Python rather than the traditional C++ or Fortran.

"That was the first time that using pure Python was shown to be a feasible approach for a major experiment at NERSC, and since then, Python has become increasingly common in our user workload," Stephey said.

The DESI early data release is now available to access for free through NERSC.

There is plenty of data yet to come from the experiment. DESI is currently two years into its five-year run and ahead of schedule on its quest to collect more than 40 million redshifts. The survey has already catalogued more than 26 million astronomical objects in its science run, and is adding more than a million per month.

Pass the salt: This space rock holds clues as to how Earth got its water

 Sodium chloride, better known as table salt, isn't exactly the type of mineral that captures the imagination of scientists. However, a smattering of tiny salt crystals discovered in a sample from an asteroid has researchers at the University of Arizona Lunar and Planetary Laboratory excited, because these crystals can only have formed in the presence of liquid water.

Even more intriguing, according to the research team, is the fact that the sample comes from an S-type asteroid, a category known to mostly lack hydrated, or water-bearing, minerals. The discovery strongly suggests that a large population of asteroids hurtling through the solar system may not be as dry as previously thought. The finding, published in Nature Astronomy, gives renewed push to the hypothesis that most, if not all, water on Earth may have arrived by way of asteroids during the planet's tumultuous infancy.

Tom Zega, the study's senior author and a professor of planetary sciences at the UArizona Lunar and Planetary Laboratory, and Shaofan Che, lead study author and a postdoctoral fellow at the Lunar and Planetary Laboratory, performed a detailed analysis of samples collected from asteroid Itokawa in 2005 by the Japanese Hayabusa mission and brought to Earth in 2010.

The study is the first to demonstrate that the salt crystals originated on the asteroid's parent body, ruling out any possibility they might have formed as a consequence of contamination after the sample reached Earth, a question that had plagued previous studies that found sodium chloride in meteorites of a similar origin.

"The grains look exactly like what you would see if you took table salt at home and placed it under an electron microscope," Zega said. "They're these nice, square crystals. It was funny, too, because we had many spirited group meeting conversations about them, because it was just so unreal."

Zega said the samples represent a type of extraterrestrial rock known as an ordinary chondrite. Derived from so-called S-type asteroids such as Itokawa, this type makes up about 87% of meteorites collected on Earth. Very few of them have been found to contain water-bearing minerals.

"It has long been thought that ordinary chondrites are an unlikely source of water on Earth," said Zega who is the director of the Lunar and Planetary Laboratory's Kuiper Materials Imaging & Characterization Facility. "Our discovery of sodium chloride tells us this asteroid population could harbor much more water than we thought."

Today, scientists largely agree that Earth, along with other rocky planets such as Venus and Mars, formed in the inner region of the roiling, swirling cloud of gas and dust around the young sun, known as the solar nebula, where temperatures were very high -- too high for water vapor to condense from the gas, according to Che.

"In other words, the water here on Earth had to be delivered from the outer reaches of the solar nebula, where temperatures were much colder and allowed water to exist, most likely in the form of ice," Che said. "The most likely scenario is that comets or another type of asteroid known as C-type asteroids, which resided farther out in the solar nebula, migrated inward and delivered their watery cargo by impacting the young Earth."

The discovery that water could have been present in ordinary chondrites, and therefore been sourced from much closer to the sun than their "wetter" kin, has implications for any scenario attempting to explain the delivery of water to the early Earth.

The sample used in the study is a tiny dust particle spanning about 150 micrometers, or roughly twice the diameter of a human hair, from which the team cut a small section about 5 microns wide -- just large enough to cover a single yeast cell -- for the analysis.

Using a variety of techniques, Che was able to rule out that the sodium chloride was the result of contamination from sources such as human sweat, the sample preparation process or exposure to laboratory moisture.

Because the sample had been stored for five years, the team took before and after photos and compared them. The photos showed that the distribution of sodium chloride grains inside the sample had not changed, ruling out the possibility that any of the grains were deposited into the sample during that time. In addition, Che performed a control experiment by treating a set of terrestrial rock samples the same as the Itokawa sample and examining them with an electron microscope.

"The terrestrial samples did not contain any sodium chloride, so that convinced us the salt in our sample is native to the asteroid Itokawa," he said. "We ruled out every possible source of contamination."

Zega said tons of extraterrestrial matter is raining down on Earth every day, but most of it burns up in the atmosphere and never makes it to the surface.

"You need a large enough rock to survive entry and deliver that water," he said.

Previous work led by the late Michael Drake, a former director of the Lunar and Planetary Lab, in the 1990s proposed a mechanism by which water molecules in the early solar system could become trapped in asteroid minerals and even survive an impact on Earth.

"Those studies suggest several oceans worth of water could be delivered just by this mechanism," Zega said. "If it now turns out that the most common asteroids may be much 'wetter' than we thought, that will make the water delivery hypothesis by asteroids even more plausible."

Itokawa is a peanut-shaped near-Earth asteroid about 2,000 feet long and 750 feet in diameter and is believed to have broken off from a much larger parent body. According to Che and Zega, it is conceivable that frozen water and frozen hydrogen chloride could have accumulated there, and that naturally occurring decay of radioactive elements and frequent bombardment by meteorites during the solar system's early days could have provided enough heat to sustain hydrothermal processes involving liquid water. Ultimately, the parent body would have succumbed to the pummeling and broken up into smaller fragments, leading to the formation of Itokawa.

"Once these ingredients come together to form asteroids, there is a potential for liquid water to form," Zega said. "And once you have liquids form, you can think of them as occupying cavities in the asteroid, and potentially do water chemistry."

The evidence pointing at the salt crystals in the Itokawa sample as being there since the beginning of the solar system does not end here, however. The researchers found a vein of plagioclase, a sodium-rich silicate mineral, running through the sample, enriched with sodium chloride.

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